Genome Assembly Quality Control
1

Visit source Download RO-Crate Run on Galaxy
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1004?version=1

Inputs

ID Name Description Type
GCA_000146045.2_genomic.fna GCA_000146045.2_genomic.fna n/a
  • File
SRR13577847_subreads.30x.fastq.gz SRR13577847_subreads.30x.fastq.gz n/a
  • File
Scerevisiae-INSC1019.flye.30x.fa Scerevisiae-INSC1019.flye.30x.fa n/a
  • File
Scerevisiae-INSC1019.hifiasm.30x.fa Scerevisiae-INSC1019.hifiasm.30x.fa n/a
  • File

Steps

ID Name Description
4 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
5 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
6 Quast toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0
7 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0
8 Chromeister toolshed.g2.bx.psu.edu/repos/iuc/chromeister/chromeister/1.5.a+galaxy1
9 Meryl toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6
10 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
11 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2
12 Merqury toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2

Version History

1 (earliest) Created 22nd Apr 2024 at 11:18 by Helena Rasche

Added/updated 3 files


Open master 07c0318
help Creators and Submitter
Creators
  • Erwan Corre
  • Stéphanie Robin
  • Anthony Bretaudeau
  • Alexandre Cormier
  • Laura Leroi
Submitter
Tools
BUSCO
QUAST
Merqury
License
GNU General Public License v3.0 or later (GPL-3.0-or-later)
Activity

Views: 1186   Downloads: 364   Runs: 0

Created: 22nd Apr 2024 at 11:18

Last updated: 22nd Apr 2024 at 11:18

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Total size: 28.9 KB
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