Genome Assembly using PacBio data 4
Visit source
Download RO-Crate
Run on GalaxyGalaxy workflow
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| PacBio reads | #main/PacBio reads | PacBio reads in fastq format |
|
| Reference genome | #main/Reference genome | Reference genome from JGI |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Flye | toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9+galaxy0 |
| 3 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 4 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2 |
| 5 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 |
| 6 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3 |
| 7 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Flye on input dataset(s): assembly graph | #main/Flye on input dataset(s): assembly graph | n/a |
|
| Flye on input dataset(s): assembly info | #main/Flye on input dataset(s): assembly info | n/a |
|
| Flye on input dataset(s): consensus | #main/Flye on input dataset(s): consensus | n/a |
|
| Flye on input dataset(s): graphical fragment assembly | #main/Flye on input dataset(s): graphical fragment assembly | n/a |
|
| Quast on input dataset(s): HTML report | #main/Quast on input dataset(s): HTML report | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
4 (earliest) Created 22nd Apr 2024 at 11:18 by Helena Rasche
Added/updated 3 files
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Views: 1133 Downloads: 324 Runs: 0
Created: 22nd Apr 2024 at 11:18
Last updated: 22nd Apr 2024 at 11:18
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https://orcid.org/0000-0001-9760-8992
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