AnnData to Cell Data Set (CDS) conversion
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1018?version=1

Inputs

ID Name Description Type
AnnData AnnData Input file in AnnData format
  • File

Steps

ID Name Description
1 Inspect AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1
2 Inspect AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1
3 Inspect AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1
4 Transpose toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.8+galaxy1
5 Monocle3 create toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_create/monocle3_create/0.1.4+galaxy2

Outputs

ID Name Description Type
Inspect AnnData: obs Inspect AnnData: obs n/a
  • File
Inspect AnnData: var Inspect AnnData: var n/a
  • File
Inspect AnnData: X Inspect AnnData: X n/a
  • File
CDS Monocle file CDS Monocle file n/a
  • File

Version History

3 (earliest) Created 22nd Apr 2024 at 11:20 by Helena Rasche

Added/updated 3 files


Open master 460bb19
help Creators and Submitter
Creator
  • Julia Jakiela
Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 28

Created: 22nd Apr 2024 at 11:20

Last updated: 22nd Apr 2024 at 11:20

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