AnnData to SingleCellExperiment (SCE) conversion
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1020?version=1

Inputs

ID Name Description Type
AnnData AnnData Input file in AnnData format
  • File
Cell ID column Cell ID column Values must match those provided in the expression matrix.
  • string?

Steps

ID Name Description
2 Inspect AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.3+galaxy0
3 Inspect AnnData toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.10.3+galaxy0
4 Transpose toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.8+galaxy1
5 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2
6 DropletUtils Read10x toolshed.g2.bx.psu.edu/repos/ebi-gxa/dropletutils_read_10x/dropletutils_read_10x/1.0.4+galaxy0

Outputs

ID Name Description Type
Inspect AnnData: obs Inspect AnnData: obs n/a
  • File
Inspect AnnData: X Inspect AnnData: X n/a
  • File
Converted SCE object Converted SCE object n/a
  • File

Version History

3 (earliest) Created 22nd Apr 2024 at 11:20 by Helena Rasche

Added/updated 3 files


Open master 132f071
help Creators and Submitter
Creators
  • Julia Jakiela
  • Morgan Howells
Submitter
Tool
DropletUtils
License
Creative Commons Attribution 4.0 International
Activity

Views: 25

Created: 22nd Apr 2024 at 11:20

Last updated: 22nd Apr 2024 at 11:20

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