Preprocessing of 10X scRNA-seq data
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1022?version=1

Inputs

ID Name Description Type
3M-february-2018.txt.gz 3M-february-2018.txt.gz n/a
  • File
Homo_sapiens.GRCh37.75.gtf Homo_sapiens.GRCh37.75.gtf n/a
  • File
subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz n/a
  • File

Steps

ID Name Description
6 RNA STARSolo toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.10b+galaxy3
7 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2
8 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2
9 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2

Version History

3 (earliest) Created 22nd Apr 2024 at 11:21 by Helena Rasche

Added/updated 3 files


Open master 10b4e3e
help Creators and Submitter
Creators
  • Wendi Bacon
  • Pavankumar Videm
  • Mehmet Tekman
  • Hans-Rudolf Hotz
  • Daniel Blankenberg
Submitter
Tools
STAR
DropletUtils
License
Creative Commons Attribution 4.0 International
Activity

Views: 35

Created: 22nd Apr 2024 at 11:21

Last updated: 22nd Apr 2024 at 11:21

help Attributions

None

Total size: 23.3 KB
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