Peptide And Protein ID Tutorial
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1033?version=1

Inputs

ID Name Description Type
Input: Protein Database Input: Protein Database n/a
  • File
Input: mzML file Input: mzML file n/a
  • File

Steps

ID Name Description
2 PeakPickerHiRes PeakPickerHiRes
3 FileConverter FileConverter
4 Search GUI toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0
5 Peptide Shaker toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0
6 Select Output: all identified contaminants. Grep1
7 Select Output: all identified proteins without common contaminants. CAVE: some proteins may be both! Grep1
8 Select Output: only those non-contaminant proteins not evaluated to be "Doubtful". Grep1

Outputs

ID Name Description Type
_anonymous_output_3 _anonymous_output_3 n/a
  • File
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File

Version History

5 (earliest) Created 22nd Apr 2024 at 11:22 by Helena Rasche

Added/updated 3 files


Open master efb5cea
help Creators and Submitter
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Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 19

Created: 22nd Apr 2024 at 11:22

Last updated: 22nd Apr 2024 at 11:22

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