GTN Proteogemics3 Novel Peptide Analysis
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/1043?version=1

Inputs

ID Name Description Type
Edited_Mus_Musculus.GRCm38.86 #main/Edited_Mus_Musculus.GRCm38.86 n/a
  • File
PSM Report #main/PSM Report n/a
  • File
genomic mapping sqlite db #main/genomic mapping sqlite db n/a
  • File
mz_sqlite #main/mz_sqlite n/a
  • File
peptides for blast #main/peptides for blast n/a
  • File

Steps

ID Name Description
5 NCBI BLAST+ blastp toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.3
6 PSM_Novel_Peptides toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0
7 Novel_Peptides toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0
8 Peptide Genomic Coodinate toolshed.g2.bx.psu.edu/repos/galaxyp/peptide_genomic_coordinate/peptide_genomic_coordinate/0.1.1
9 PepPointer toolshed.g2.bx.psu.edu/repos/galaxyp/pep_pointer/pep_pointer/0.1.3
10 Final_Summary_Novel_Peptides toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0

Outputs

ID Name Description Type
BLASTP_results #main/BLASTP_results n/a
  • File
Final_Summary_Novel_Peptides #main/Final_Summary_Novel_Peptides n/a
  • File
Novel_Peptides #main/Novel_Peptides n/a
  • File
PSM_Novel_Peptides #main/PSM_Novel_Peptides n/a
  • File
PepPointer on input dataset(s) #main/PepPointer on input dataset(s) n/a
  • File
Peptide Genomic Coodinate on input dataset(s) #main/Peptide Genomic Coodinate on input dataset(s) n/a
  • File

Version History

7 (earliest) Created 22nd Apr 2024 at 11:24 by Helena Rasche

Added/updated 3 files


Open master 642b8f9
help Creators and Submitter
Creators
Not specified
Submitter
Tool
BLAST
License
Creative Commons Attribution 4.0 International
Activity

Views: 36

Created: 22nd Apr 2024 at 11:24

Last updated: 22nd Apr 2024 at 11:24

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