Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur] 1.0
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Download RO-Crate16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur], available in the GTN
Thanks to...
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut, Dave Clements
Workflow Author(s): Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Cleaned Sequences | #main/Cleaned Sequences | n/a |
|
| Count Table | #main/Count Table | n/a |
|
| Training set FASTA | #main/Training set FASTA | n/a |
|
| Training set Taxonomy | #main/Training set Taxonomy | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Classify.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0 |
| 5 | Remove.lineage | toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0 |
| 6 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:53 by Helena Rasche
Added/updated 4 files
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Creators and Submitter
Views: 351 Downloads: 88
Created: 25th Jun 2024 at 10:53
Last updated: 25th Jun 2024 at 10:53
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