Training: 16S rRNA Analysis with Nanopore Sequencing Reads
1.0

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Workflow Type: Galaxy

16S rRNA analysis with Nanopore reads

Associated Tutorial

This workflows is part of the tutorial Training: 16S rRNA Analysis with Nanopore Sequencing Reads, available in the GTN

Thanks to...

Tutorial Author(s): Cristóbal Gallardo

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1064?version=1

Steps

ID Name Description
1 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
2 Porechop toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3
3 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1
4 fastp toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0
5 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
6 Kraken2 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0
7 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1
8 Reverse toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0
9 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2
10 Remove beginning Remove beginning1
11 Krona pie chart toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1

Version History

1.0 (earliest) Created 25th Jun 2024 at 10:53 by Helena Rasche

Added/updated 4 files


Open master bd7ee6d
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
FastQC
MultiQC
fastp
kraken2
taxonomy_krona_chart
License
Creative Commons Attribution 4.0 International
Activity

Views: 137   Downloads: 42

Created: 25th Jun 2024 at 10:53

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Total size: 63.1 KB
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