Training: 16S rRNA Analysis with Nanopore Sequencing Reads 1.0
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Run on Galaxy16S rRNA analysis with Nanopore reads
Associated Tutorial
This workflows is part of the tutorial Training: 16S rRNA Analysis with Nanopore Sequencing Reads, available in the GTN
Thanks to...
Tutorial Author(s): Cristóbal Gallardo
Steps
| ID | Name | Description |
|---|---|---|
| 1 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 2 | Porechop | toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3 |
| 3 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 |
| 4 | fastp | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 |
| 5 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 6 | Kraken2 | toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 |
| 7 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 |
| 8 | Reverse | toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 |
| 9 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
| 10 | Remove beginning | Remove beginning1 |
| 11 | Krona pie chart | toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1 |
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:53 by Helena Rasche
Added/updated 4 files
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Views: 1135 Downloads: 341 Runs: 1
Created: 25th Jun 2024 at 10:53
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