WGS Part In "Analyses Of Metagenomics Data - The Global Picture"
1.0

Visit source Download RO-Crate
Workflow Type: Galaxy

Analyses of metagenomics data - The global picture

Associated Tutorial

This workflows is part of the tutorial WGS Part In "Analyses Of Metagenomics Data - The Global Picture", available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, Bérénice Batut

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1067?version=1

Steps

ID Name Description
1 MetaPhlAn2 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0
2 Format MetaPhlAn2 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0
3 HUMAnN2 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.9.9.0
4 Krona pie chart toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1
5 Renormalize toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0
6 Regroup toolshed.g2.bx.psu.edu/repos/iuc/humann2_regroup_table/humann2_regroup_table/0.9.9.0
7 Renormalize toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0

Version History

1.0 (earliest) Created 25th Jun 2024 at 10:53 by Helena Rasche

Added/updated 4 files


Open master dfa24f7
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
MetaPhlAn
HUMAnN2
taxonomy_krona_chart
License
Creative Commons Attribution 4.0 International
Activity

Views: 146   Downloads: 47

Created: 25th Jun 2024 at 10:53

help Attributions

None

Total size: 52.1 KB
Powered by
 (v.1.16.0-main)
About Dev WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH