Workflow Type: Galaxy
Open
Analyses of metagenomics data - The global picture
Associated Tutorial
This workflows is part of the tutorial Amplicon Tutorial, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut
Inputs
ID | Name | Description | Type |
---|---|---|---|
Anguil Soil Sample | Anguil Soil Sample | n/a |
|
Pampa Soil Sample | Pampa Soil Sample | n/a |
|
SILVA Reference | SILVA Reference | n/a |
|
Trainset PDS alignment | Trainset PDS alignment | n/a |
|
Trainset PDS taxonomy | Trainset PDS taxonomy | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Merge.files | toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.36.1.0 |
6 | Make.group | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.36.1.0 |
7 | Unique.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0 |
8 | Count.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0 |
9 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0 |
10 | Screen.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0 |
11 | Align.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0 |
12 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0 |
13 | Screen.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0 |
14 | Filter.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.36.1.0 |
15 | Pre.cluster | toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.36.1.0 |
16 | Classify.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.36.1.0 |
17 | Cluster.split | toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.36.1.0 |
18 | Make.shared | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.36.1.0 |
19 | Classify.otu | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.36.1.0 |
20 | Make.biom | toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.36.1.0 |
21 | Visualize with Krona | toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
mothur_make_shared_shared | mothur_make_shared_shared | n/a |
|
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:54 by Helena Rasche
Added/updated 4 files
Open
master
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Activity
Views: 143 Downloads: 44
Created: 25th Jun 2024 at 10:54
Last updated: 25th Jun 2024 at 10:54
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