Debruijn Graph
4.0

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Workflow Type: Galaxy

De Bruijn Graph Assembly

Associated Tutorial

This workflows is part of the tutorial Debruijn Graph, available in the GTN

Features

Thanks to...

Tutorial Author(s): Simon Gladman, Helena Rasche, Saskia Hiltemann

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1124?version=1

Inputs

ID Name Description Type
mutant_R1 mutant_R1 n/a
  • File
mutant_R2 mutant_R2 n/a
  • File

Steps

ID Name Description
2 VelvetOptimiser toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6
3 SPAdes toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1
4 Fasta Statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1
5 Fasta Statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.1

Outputs

ID Name Description Type
fasta_stats_velvet fasta_stats_velvet n/a
  • File
fasta_stats_spades fasta_stats_spades n/a
  • File

Version History

4.0 (earliest) Created 25th Jun 2024 at 11:00 by Helena Rasche

Added/updated 4 files


Open master d6f1f40
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
VelvetOptimiser
SPAdes
License
Creative Commons Attribution 4.0 International
Activity

Views: 325   Downloads: 93

Created: 25th Jun 2024 at 11:00

Last updated: 25th Jun 2024 at 11:00

help Attributions

None

Total size: 38.3 KB
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