Workflow Type: Common Workflow Language
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Inputs
ID | Name | Description | Type |
---|---|---|---|
step1_pdb_name | n/a | n/a |
|
step1_pdb_config | n/a | n/a |
|
step4_editconf_config | n/a | n/a |
|
step6_gppion_config | n/a | n/a |
|
step7_genion_config | n/a | n/a |
|
step8_gppmin_config | n/a | n/a |
|
step10_energy_min_config | n/a | n/a |
|
step10_energy_min_name | n/a | n/a |
|
step11_gppnvt_config | n/a | n/a |
|
step13_energy_nvt_config | n/a | n/a |
|
step13_energy_nvt_name | n/a | n/a |
|
step14_gppnpt_config | n/a | n/a |
|
step16_energy_npt_config | n/a | n/a |
|
step16_energy_npt_name | n/a | n/a |
|
step17_gppmd_config | n/a | n/a |
|
step19_rmsfirst_config | n/a | n/a |
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step19_rmsfirst_name | n/a | n/a |
|
step20_rmsexp_config | n/a | n/a |
|
step20_rmsexp_name | n/a | n/a |
|
step21_rgyr_config | n/a | n/a |
|
step22_image_config | n/a | n/a |
|
step23_dry_config | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
step1_pdb | n/a | n/a |
step2_fixsidechain | n/a | n/a |
step3_pdb2gmx | n/a | n/a |
step4_editconf | n/a | n/a |
step5_solvate | n/a | n/a |
step6_grompp_genion | n/a | n/a |
step7_genion | n/a | n/a |
step8_grompp_min | n/a | n/a |
step9_mdrun_min | n/a | n/a |
step10_energy_min | n/a | n/a |
step11_grompp_nvt | n/a | n/a |
step12_mdrun_nvt | n/a | n/a |
step13_energy_nvt | n/a | n/a |
step14_grompp_npt | n/a | n/a |
step15_mdrun_npt | n/a | n/a |
step16_energy_npt | n/a | n/a |
step17_grompp_md | n/a | n/a |
step18_mdrun_md | n/a | n/a |
step19_rmsfirst | n/a | n/a |
step20_rmsexp | n/a | n/a |
step21_rgyr | n/a | n/a |
step22_image | n/a | n/a |
step23_dry | n/a | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
trr | n/a | n/a |
|
trr_imaged_dry | n/a | n/a |
|
gro_dry | n/a | n/a |
|
gro | n/a | n/a |
|
cpt | n/a | n/a |
|
tpr | n/a | n/a |
|
top | n/a | n/a |
|
xvg_min | n/a | n/a |
|
xvg_nvt | n/a | n/a |
|
xvg_npt | n/a | n/a |
|
xvg_rmsfirst | n/a | n/a |
|
xvg_rmsexp | n/a | n/a |
|
xvg_rgyr | n/a | n/a |
|
Version History
Version 2 (latest) Created 11th Jun 2020 at 11:35 by Stian Soiland-Reyes
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9919057
Version 1 (earliest) Created 11th Jun 2020 at 11:31 by Stian Soiland-Reyes
Added/updated 2 files
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master
6e661d3
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Views: 2360 Downloads: 423
Created: 11th Jun 2020 at 11:31
Last updated: 9th Jul 2021 at 09:23
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