Workflow Type: Common Workflow Language
Open
Open
I don't even know. Only works on BSC.
Click and drag the diagram to pan, double click or use the controls to zoom.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| step1_pdb_name | n/a | n/a |
|
| step1_pdb_config | n/a | n/a |
|
| step4_editconf_config | n/a | n/a |
|
| step6_gppion_config | n/a | n/a |
|
| step7_genion_config | n/a | n/a |
|
| step8_gppmin_config | n/a | n/a |
|
| step10_energy_min_config | n/a | n/a |
|
| step10_energy_min_name | n/a | n/a |
|
| step11_gppnvt_config | n/a | n/a |
|
| step13_energy_nvt_config | n/a | n/a |
|
| step13_energy_nvt_name | n/a | n/a |
|
| step14_gppnpt_config | n/a | n/a |
|
| step16_energy_npt_config | n/a | n/a |
|
| step16_energy_npt_name | n/a | n/a |
|
| step17_gppmd_config | n/a | n/a |
|
| step19_rmsfirst_config | n/a | n/a |
|
| step19_rmsfirst_name | n/a | n/a |
|
| step20_rmsexp_config | n/a | n/a |
|
| step20_rmsexp_name | n/a | n/a |
|
| step21_rgyr_config | n/a | n/a |
|
| step22_image_config | n/a | n/a |
|
| step23_dry_config | n/a | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| step1_pdb | n/a | n/a |
| step2_fixsidechain | n/a | n/a |
| step3_pdb2gmx | n/a | n/a |
| step4_editconf | n/a | n/a |
| step5_solvate | n/a | n/a |
| step6_grompp_genion | n/a | n/a |
| step7_genion | n/a | n/a |
| step8_grompp_min | n/a | n/a |
| step9_mdrun_min | n/a | n/a |
| step10_energy_min | n/a | n/a |
| step11_grompp_nvt | n/a | n/a |
| step12_mdrun_nvt | n/a | n/a |
| step13_energy_nvt | n/a | n/a |
| step14_grompp_npt | n/a | n/a |
| step15_mdrun_npt | n/a | n/a |
| step16_energy_npt | n/a | n/a |
| step17_grompp_md | n/a | n/a |
| step18_mdrun_md | n/a | n/a |
| step19_rmsfirst | n/a | n/a |
| step20_rmsexp | n/a | n/a |
| step21_rgyr | n/a | n/a |
| step22_image | n/a | n/a |
| step23_dry | n/a | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| trr | n/a | n/a |
|
| trr_imaged_dry | n/a | n/a |
|
| gro_dry | n/a | n/a |
|
| gro | n/a | n/a |
|
| cpt | n/a | n/a |
|
| tpr | n/a | n/a |
|
| top | n/a | n/a |
|
| xvg_min | n/a | n/a |
|
| xvg_nvt | n/a | n/a |
|
| xvg_npt | n/a | n/a |
|
| xvg_rmsfirst | n/a | n/a |
|
| xvg_rmsexp | n/a | n/a |
|
| xvg_rgyr | n/a | n/a |
|
Version History
Version 2 (latest) Created 11th Jun 2020 at 11:35 by Stian Soiland-Reyes
No revision comments
Open
master
9919057
Version 1 (earliest) Created 11th Jun 2020 at 11:31 by Stian Soiland-Reyes
Added/updated 2 files
Open
master
6e661d3
Creators and SubmitterCreators
Not specifiedSubmitter
License
Activity
Views: 3182 Downloads: 858
Created: 11th Jun 2020 at 11:31
Last updated: 9th Jul 2021 at 09:23
TagsThis item has not yet been tagged.
AttributionsNone
View on GitHub
https://orcid.org/0000-0001-9842-9718