Proteomics: MaxQuant workflow
6.0 (latest)

6.0 (latest)

8.0 (earliest)

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Run on Galaxy

Workflow Type: Galaxy

Label-free data analysis using MaxQuant

Associated Tutorial

This workflows is part of the tutorial Proteomics: MaxQuant workflow, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): Melanie Föll, Matthias Fahrner

SEEK ID: https://dev.workflowhub.eu/workflows/1140?version=2

Inputs

ID	Name	Description	Type
Protein_database	#main/Protein_database	n/a	File
Sample1	#main/Sample1	n/a	File
Sample2	#main/Sample2	n/a	File

Steps

ID	Name	Description
3	MaxQuant	toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3
4	Filter	Filter1
5	Select	Grep1
6	Cut	Cut1
7	Sort	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
8	Compute	toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
9	Sort	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
10	Compute	toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
11	Cut	Cut1
12	Compute	toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
13	Histogram	toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4

Outputs

ID	Name	Description	Type
_anonymous_output_10	#main/_anonymous_output_10	n/a	File
_anonymous_output_11	#main/_anonymous_output_11	n/a	File
_anonymous_output_12	#main/_anonymous_output_12	n/a	File
_anonymous_output_13	#main/_anonymous_output_13	n/a	File
_anonymous_output_14	#main/_anonymous_output_14	n/a	File
_anonymous_output_15	#main/_anonymous_output_15	n/a	File
_anonymous_output_16	#main/_anonymous_output_16	n/a	File
_anonymous_output_17	#main/_anonymous_output_17	n/a	File
_anonymous_output_4	#main/_anonymous_output_4	n/a	File
_anonymous_output_5	#main/_anonymous_output_5	n/a	File
_anonymous_output_6	#main/_anonymous_output_6	n/a	File
_anonymous_output_7	#main/_anonymous_output_7	n/a	File
_anonymous_output_8	#main/_anonymous_output_8	n/a	File
_anonymous_output_9	#main/_anonymous_output_9	n/a	File

Version History

6.0 (latest) Created 16th Jul 2024 at 14:07 by Helena Rasche

Added/updated 4 files

Open master f8f80cd

8.0 (earliest) Created 25th Jun 2024 at 11:02 by Helena Rasche

Added/updated 4 files

Frozen 8.0 3753ddf

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

MaxQuant

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Activity

Views: 1523 Downloads: 532 Runs: 0

Created: 25th Jun 2024 at 11:02

Last updated: 25th Jun 2024 at 11:02

Proteomics: MaxQuant workflow 6.0 (latest) 6.0 (latest) 8.0 (earliest)