Long non-coding RNAs (lncRNAs) annotation with FEELnc
1.0

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Workflow Type: Galaxy

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Associated Tutorial

This workflows is part of the tutorial Long non-coding RNAs (lncRNAs) annotation with FEELnc, available in the GTN

Tutorial Author(s): Stéphanie Robin

Tutorial Contributor(s): Anthony Bretaudeau

Workflow Author(s): Stéphanie Robin

SEEK ID: https://dev.workflowhub.eu/workflows/1141?version=1

ID	Name	Description	Type
genome_annotation.gff3	#main/genome_annotation.gff3	Original structural annotation	File
genome_assembly.fasta	#main/genome_assembly.fasta	Genome sequence	File
mapped_RNASeq.bam	#main/mapped_RNASeq.bam	RNASeq data mapped on the genome	File

ID	Name	Description
3	StringTie	toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.6
4	gffread	toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.3+galaxy0
5	FEELnc	toolshed.g2.bx.psu.edu/repos/iuc/feelnc/feelnc/0.2
6	Concatenate datasets	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1

ID	Name	Description	Type
Classifier output	#main/Classifier output	n/a	File
final_annotation	#main/final_annotation	n/a	File
lncRNAs	#main/lncRNAs	n/a	File
mRNAs	#main/mRNAs	n/a	File