RetroSynthesis
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Workflow Type: Galaxy

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

Associated Tutorial

This workflows is part of the tutorial RetroSynthesis, available in the GTN

Tutorial Author(s): Guillaume Gricourt, Thomas Duigou, Kenza Bazi-Kabbaj, Joan Hérisson, Ioana Popescu, Jean-Loup Faulon

SEEK ID: https://dev.workflowhub.eu/workflows/1142?version=2

ID	Name	Description	Type
Target to produce	#main/Target to produce	n/a	string

ID	Name	Description
1	Pick SBML Model	toolshed.g2.bx.psu.edu/repos/tduigou/get_sbml_model/get_sbml_model/0.0.1
2	RRules Parser	toolshed.g2.bx.psu.edu/repos/tduigou/rrparser/rrparser/2.4.6
3	Sink from SBML	toolshed.g2.bx.psu.edu/repos/tduigou/rpextractsink/rpextractsink/5.12.1
4	RetroPath2.0	toolshed.g2.bx.psu.edu/repos/tduigou/retropath2/retropath2/2.3.0
5	RP2paths	toolshed.g2.bx.psu.edu/repos/tduigou/rp2paths/rp2paths/1.5.0
6	Complete Reactions	toolshed.g2.bx.psu.edu/repos/tduigou/rpcompletion/rpcompletion/5.12.2

ID	Name	Description	Type
Pick SBML Model - iML1515	#main/Pick SBML Model - iML1515	n/a	File
RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16'])	#main/RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16'])	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File
_anonymous_output_3	#main/_anonymous_output_3	n/a	File
_anonymous_output_4	#main/_anonymous_output_4	n/a	File
_anonymous_output_5	#main/_anonymous_output_5	n/a	File
_anonymous_output_6	#main/_anonymous_output_6	n/a	File

Added/updated 4 files

Open master dd03398

Added/updated 4 files

Frozen 2.0 526ffd6

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Created: 25th Jun 2024 at 11:02

Last updated: 25th Jun 2024 at 11:02