RetroSynthesis
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Run on GalaxyGenerating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools
Associated Tutorial
This workflows is part of the tutorial RetroSynthesis, available in the GTN
Thanks to...
Tutorial Author(s): Guillaume Gricourt, Thomas Duigou, Kenza Bazi-Kabbaj, Joan Hérisson, Ioana Popescu, Jean-Loup Faulon
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Target to produce | #main/Target to produce | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Pick SBML Model | toolshed.g2.bx.psu.edu/repos/tduigou/get_sbml_model/get_sbml_model/0.0.1 |
| 2 | RRules Parser | toolshed.g2.bx.psu.edu/repos/tduigou/rrparser/rrparser/2.4.6 |
| 3 | Sink from SBML | toolshed.g2.bx.psu.edu/repos/tduigou/rpextractsink/rpextractsink/5.12.1 |
| 4 | RetroPath2.0 | toolshed.g2.bx.psu.edu/repos/tduigou/retropath2/retropath2/2.3.0 |
| 5 | RP2paths | toolshed.g2.bx.psu.edu/repos/tduigou/rp2paths/rp2paths/1.5.0 |
| 6 | Complete Reactions | toolshed.g2.bx.psu.edu/repos/tduigou/rpcompletion/rpcompletion/5.12.2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Pick SBML Model - iML1515 | #main/Pick SBML Model - iML1515 | n/a |
|
| RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16']) | #main/RRules Parser(retro, d=['2', '4', '6', '8', '10', '12', '14', '16']) | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
Version History
1.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche
Added/updated 4 files
Open
masterdd03398
2.0 (earliest) Created 25th Jun 2024 at 11:02 by Helena Rasche
Added/updated 4 files
Frozen
2.0526ffd6
Creators and Submitter
Views: 1281 Downloads: 534 Runs: 0
Created: 25th Jun 2024 at 11:02
Last updated: 25th Jun 2024 at 11:02
Tags AttributionsNone
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