Racon polish with Illumina reads (R1 only), x2 - upgraded

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Racon polish with Illumina reads (R1 only), x2 - upgraded, available in the GTN

Thanks to...

Tutorial Author(s): Anna Syme

Workflow Author(s): Anna Syme

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1148?version=2

Inputs

ID Name Description Type
Assembly to be polished #main/Assembly to be polished n/a
  • File
Illumina reads, R1, in fastq.gz format #main/Illumina reads, R1, in fastq.gz format n/a
  • File

Steps

ID Name Description
2 Minimap2 round 1: map reads to assembly toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
3 Racon round 1: polish assembly toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1
4 Minimap2 round 2: map reads to assembly toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0
5 Racon round 2: polish assembly toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1

Outputs

ID Name Description Type
Assembly polished by short reads using Racon #main/Assembly polished by short reads using Racon n/a
  • File

Version History

2.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master 68cb1a8

4.0 (earliest) Created 25th Jun 2024 at 11:03 by Helena Rasche

Added/updated 4 files


Frozen 4.0 ff7c4e8
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
Minimap2
Racon
License
GNU General Public License v3.0 or later (GPL-3.0-or-later)
Activity

Views: 1394   Downloads: 518   Runs: 0

Created: 25th Jun 2024 at 11:03

Last updated: 25th Jun 2024 at 11:03

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Total size: 81.8 KB
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