Workflow Methylation Seq

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Workflow Type: Galaxy

DNA Methylation data analysis

Associated Tutorial

This workflows is part of the tutorial Workflow Methylation Seq, available in the GTN

Features

Thanks to...

Tutorial Author(s): Joachim Wolff, Devon Ryan

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1157?version=2

Steps

ID Name Description
9 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68
10 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68
11 bwameth toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3
12 Replace column toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1
13 metilene toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1
14 MethylDackel toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0
15 MethylDackel toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0
16 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
17 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
18 computeMatrix toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0
19 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0
20 computeMatrix toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0
21 plotProfile toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0

Version History

3.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche

Added/updated 4 files


Open master 1258df8

4.0 (earliest) Created 25th Jun 2024 at 11:04 by Helena Rasche

Added/updated 4 files


Frozen 4.0 85f55fd
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
FastQC
MethylDackel
DeepTools
License
Creative Commons Attribution 4.0 International
Activity

Views: 182   Downloads: 76

Created: 25th Jun 2024 at 11:04

Last updated: 25th Jun 2024 at 11:04

help Attributions

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Total size: 123 KB
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