Workflow Methylation Seq
Visit source
Download RO-Crate
Run on GalaxyDNA Methylation data analysis
Associated Tutorial
This workflows is part of the tutorial Workflow Methylation Seq, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Devon Ryan
Steps
| ID | Name | Description |
|---|---|---|
| 9 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 10 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 11 | bwameth | toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 |
| 12 | Replace column | toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 |
| 13 | metilene | toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1 |
| 14 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 15 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 16 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 17 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 18 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 19 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 |
| 20 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 21 | plotProfile | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 |
Version History
3.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche
Added/updated 4 files
Open
master1258df8
4.0 (earliest) Created 25th Jun 2024 at 11:04 by Helena Rasche
Added/updated 4 files
Frozen
4.085f55fd
Creators and Submitter
Views: 1480 Downloads: 599 Runs: 0
Created: 25th Jun 2024 at 11:04
Last updated: 25th Jun 2024 at 11:04
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test, test 705c32e038d0, Workshop Mar 2025 Test Out, Genomics for Australian Plants, Testing RO-crate generation and submission, BSC Dev, LS Test Team, CSB, MyTestTeam, Workflow Registry LUMC, FAIRagro test
Web page: Not specified
Space: General
Public web page: https://galaxy.training
