Workflow Type: Galaxy
Open
Frozen
DNA Methylation data analysis
Associated Tutorial
This workflows is part of the tutorial Workflow Methylation Seq, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Devon Ryan
Steps
ID | Name | Description |
---|---|---|
9 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
10 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
11 | bwameth | toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 |
12 | Replace column | toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 |
13 | metilene | toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1 |
14 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
15 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
16 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
17 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
18 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
19 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 |
20 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
21 | plotProfile | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 |
Version History
3.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche
Added/updated 4 files
Open
master
1258df8
4.0 (earliest) Created 25th Jun 2024 at 11:04 by Helena Rasche
Added/updated 4 files
Frozen
4.0
85f55fd
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Views: 369 Downloads: 129
Created: 25th Jun 2024 at 11:04
Last updated: 25th Jun 2024 at 11:04
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