Workflow Type: Galaxy
Open
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Metaproteomics tutorial
Associated Tutorial
This workflows is part of the tutorial Metaproteomics_GTN, available in the GTN
Thanks to...
Tutorial Author(s): Timothy J. Griffin, Pratik Jagtap, James Johnson, Clemens Blank, Subina Mehta
Inputs
ID | Name | Description | Type |
---|---|---|---|
Dataset Collection of Bering Strait MGF Files | #main/Dataset Collection of Bering Strait MGF Files | n/a |
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Gene Ontology Terms (Selected) | #main/Gene Ontology Terms (Selected) | n/a |
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Sixgill generated protein FASTA File | #main/Sixgill generated protein FASTA File | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
4 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3 |
5 | Query Tabular Select Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
6 | Unipept pept2prot | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
7 | Unipept lca | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
8 | Go Pop2Prot DB | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
9 | Genera | PSMs | Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
10 | GO Terms: Biological Processes | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
11 | GO Terms: Molecular Functions | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
12 | GO Terms: Cellular Localization | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Peptide Shaker on input dataset(s): mzidentML file | #main/Peptide Shaker on input dataset(s): mzidentML file | n/a |
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Search GUI on input dataset(s) | #main/Search GUI on input dataset(s) | n/a |
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_anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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_anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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_anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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_anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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_anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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_anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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_anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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_anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
7.0 (latest) Created 16th Jul 2024 at 14:07 by Helena Rasche
Added/updated 4 files
Open
master
491c7b5
9.0 (earliest) Created 25th Jun 2024 at 11:04 by Helena Rasche
Added/updated 4 files
Frozen
9.0
5b2556e
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Views: 416 Downloads: 150
Created: 25th Jun 2024 at 11:04
Last updated: 25th Jun 2024 at 11:04
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