kmer counting - meryl - upgraded
Visit source
Download RO-Crate
Run on GalaxyAssociated Tutorial
This workflows is part of the tutorial kmer counting - meryl - upgraded, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Tutorial Author(s): Anna Syme
Workflow Author(s): Anna Syme
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Illumina reads R1 | #main/Illumina reads R1 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Meryl - count kmers | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 2 | Meryl - generate histogram | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
| 3 | Genomescope | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| GenomeScope on input dataset(s) Linear plot | #main/GenomeScope on input dataset(s) Linear plot | n/a |
|
| GenomeScope on input dataset(s) Log plot | #main/GenomeScope on input dataset(s) Log plot | n/a |
|
| GenomeScope on input dataset(s) Transformed linear plot | #main/GenomeScope on input dataset(s) Transformed linear plot | n/a |
|
| GenomeScope on input dataset(s) Transformed log plot | #main/GenomeScope on input dataset(s) Transformed log plot | n/a |
|
| Meryl on input dataset(s): read-db.meryldb | #main/Meryl on input dataset(s): read-db.meryldb | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
Version History
2.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche
Added/updated 4 files
Open
master7b6e541
4.0 (earliest) Created 25th Jun 2024 at 11:05 by Helena Rasche
Added/updated 4 files
Frozen
4.0e794871
Creators and Submitter
Views: 1389 Downloads: 521 Runs: 0
Created: 25th Jun 2024 at 11:05
Last updated: 25th Jun 2024 at 11:05
AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test, test 705c32e038d0, Workshop Mar 2025 Test Out, Genomics for Australian Plants, Testing RO-crate generation and submission, BSC Dev, LS Test Team, CSB, MyTestTeam
Web page: Not specified
Space: General
Public web page: https://galaxy.training
