Assembly with Flye - upgraded

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Assembly with Flye - upgraded, available in the GTN

Features

Thanks to...

Tutorial Author(s): Anna Syme

Workflow Author(s): Anna Syme

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1170?version=2

Inputs

ID Name Description Type
long reads long reads n/a
  • File

Steps

ID Name Description
1 Flye: assembly toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.3+galaxy0
2 Fasta statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
3 Quast genome report toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
4 Bandage image: Flye assembly toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4
5 Bar chart: show contig sizes barchart_gnuplot

Outputs

ID Name Description Type
Flye assembly on input dataset(s) (consensus) Flye assembly on input dataset(s) (consensus) n/a
  • File
Flye assembly on input dataset(s) (assembly_graph) Flye assembly on input dataset(s) (assembly_graph) n/a
  • File
Flye assembly on input dataset(s) (Graphical Fragment Assembly) Flye assembly on input dataset(s) (Graphical Fragment Assembly) n/a
  • File
Flye assembly on input dataset(s) (assembly_info) Flye assembly on input dataset(s) (assembly_info) n/a
  • File
Quast on input dataset(s): HTML report Quast on input dataset(s): HTML report n/a
  • File
Bandage Image on input dataset(s): Assembly Graph Image Bandage Image on input dataset(s): Assembly Graph Image n/a
  • File
Bar chart showing contig sizes Bar chart showing contig sizes n/a
  • File

Version History

2.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master cac6669

4.0 (earliest) Created 25th Jun 2024 at 11:05 by Helena Rasche

Added/updated 4 files


Frozen 4.0 148c7f1
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
Flye
QUAST
Bandage
License
GNU General Public License v3.0 or later
Activity

Views: 189   Downloads: 92

Created: 25th Jun 2024 at 11:05

Last updated: 25th Jun 2024 at 11:05

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Total size: 85.3 KB
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