Workflow Type: Galaxy
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Peptide and Protein ID using SearchGUI and PeptideShaker
Associated Tutorial
This workflows is part of the tutorial ProteinID SG PS Tutorial WF datasetCollection, available in the GTN
Thanks to...
Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning
Steps
ID | Name | Description |
---|---|---|
2 | PeakPickerHiRes | PeakPickerHiRes |
3 | FileConverter | FileConverter |
4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0 |
5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 |
6 | Select | Output: all identified contaminant proteins Grep1 |
7 | Select | Output: all identified non-contaminant proteins Grep1 |
8 | Select | Output: identified non-contaminant proteins, validated to be "Confident". Grep1 |
Version History
4.0 (latest) Created 16th Jul 2024 at 14:07 by Helena Rasche
Added/updated 4 files
Open
master
6228920
5.0 (earliest) Created 25th Jun 2024 at 11:05 by Helena Rasche
Added/updated 4 files
Frozen
5.0
6c2cab0
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Views: 183 Downloads: 86
Created: 25th Jun 2024 at 11:05
Last updated: 25th Jun 2024 at 11:06
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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