Peptide And Protein ID Tutorial
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Run on GalaxyPeptide and Protein ID using SearchGUI and PeptideShaker
Associated Tutorial
This workflows is part of the tutorial Peptide And Protein ID Tutorial, available in the GTN
Thanks to...
Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input: Protein Database | Input: Protein Database | n/a |
|
| Input: mzML file | Input: mzML file | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | PeakPickerHiRes | PeakPickerHiRes |
| 3 | FileConverter | FileConverter |
| 4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0 |
| 5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 |
| 6 | Select | Output: all identified contaminants. Grep1 |
| 7 | Select | Output: all identified proteins without common contaminants. CAVE: some proteins may be both! Grep1 |
| 8 | Select | Output: only those non-contaminant proteins not evaluated to be "Doubtful". Grep1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
| _anonymous_output_6 | _anonymous_output_6 | n/a |
|
| _anonymous_output_7 | _anonymous_output_7 | n/a |
|
| _anonymous_output_8 | _anonymous_output_8 | n/a |
|
| _anonymous_output_9 | _anonymous_output_9 | n/a |
|
| _anonymous_output_10 | _anonymous_output_10 | n/a |
|
Version History
4.0 (latest) Created 16th Jul 2024 at 14:07 by Helena Rasche
Added/updated 4 files
Open
master4e0e0ad
5.0 (earliest) Created 25th Jun 2024 at 11:06 by Helena Rasche
Added/updated 4 files
Frozen
5.0d9f70d5
Creators and Submitter
Views: 1411 Downloads: 527 Runs: 0
Created: 25th Jun 2024 at 11:06
Last updated: 25th Jun 2024 at 11:06
Tags AttributionsNone
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