Workflow constructed from history 'CRISPR tutorial Kenji'

Visit source Download RO-Crate
Workflow Type: Galaxy

CRISPR screen analysis

Associated Tutorial

This workflows is part of the tutorial Workflow constructed from history 'CRISPR tutorial Kenji', available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Kenji Fujihara, Twishi Gulati

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1179?version=2

Inputs

ID Name Description Type
Calabrese_SetA_Guides_Reference.csv Calabrese_SetA_Guides_Reference.csv n/a
  • File
Input Dataset Collection Input Dataset Collection n/a
  • File[]
broadgpp-brunello-library-contents.csv broadgpp-brunello-library-contents.csv n/a
  • File

Steps

ID Name Description
3 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
4 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy1
5 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1
6 MAGeCK count toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.9.2.4
7 MAGeCKs test toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.9.2.1

Version History

1.0 (latest) Created 16th Jul 2024 at 14:05 by Helena Rasche

Added/updated 4 files


Open master df0eaab

2.0 (earliest) Created 25th Jun 2024 at 11:06 by Helena Rasche

Added/updated 4 files


Frozen 2.0 d011396
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
FastQC
Cutadapt
MultiQC
MAGeCK
License
Creative Commons Attribution 4.0 International
Activity

Views: 584   Downloads: 177

Created: 25th Jun 2024 at 11:06

Last updated: 25th Jun 2024 at 11:06

help Attributions

None

Total size: 47.4 KB
Powered by
 (v.1.16.0-main)
About Dev WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH