Unicycler training
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Download RO-CrateUnicycler Assembly
Associated Tutorial
This workflows is part of the tutorial Unicycler training, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Delphine Lariviere, Simon Gladman
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Forward reads | #main/Forward reads | n/a |
|
| Long Reads | #main/Long Reads | n/a |
|
| Reverse Reads | #main/Reverse Reads | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 5 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0 |
| 6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 |
| 7 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy0 |
| 8 | Prokka | toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
|
| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
|
| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
|
| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
|
| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
|
| _anonymous_output_17 | #main/_anonymous_output_17 | n/a |
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| _anonymous_output_18 | #main/_anonymous_output_18 | n/a |
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| _anonymous_output_19 | #main/_anonymous_output_19 | n/a |
|
| _anonymous_output_20 | #main/_anonymous_output_20 | n/a |
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| _anonymous_output_21 | #main/_anonymous_output_21 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
| ffn | #main/ffn | n/a |
|
| gbk | #main/gbk | n/a |
|
| tbl | #main/tbl | n/a |
|
Version History
4.0 (latest) Created 16th Jul 2024 at 14:09 by Helena Rasche
Added/updated 4 files
Open
master2629a0d
9.0 (earliest) Created 25th Jun 2024 at 11:07 by Helena Rasche
Added/updated 4 files
Frozen
9.0d6522ba
Creators and Submitter
Views: 602 Downloads: 222
Created: 25th Jun 2024 at 11:07
Last updated: 25th Jun 2024 at 11:07
AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
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