Workflow Type: Galaxy
Open
Frozen
Refining Genome Annotations with Apollo
Associated Tutorial
This workflows is part of the tutorial Apollo Load Test, available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, Helena Rasche, Nathan Dunn, Mateo Boudet
Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway
Inputs
ID | Name | Description | Type |
---|---|---|---|
Amel_4.5_scaffolds.fa.gz | #Amel_4.5_scaffolds.fa.gz | n/a |
|
amel_OGSv3.2.gff3.gz | #amel_OGSv3.2.gff3.gz | n/a |
|
forager.bw | #forager.bw | n/a |
|
forager_Amel4.5_accepted_hits.bam | #forager_Amel4.5_accepted_hits.bam | n/a |
|
Steps
ID | Name | Description |
---|---|---|
4 | Register Account | toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/3.1 |
5 | List Organisms | toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/3.1 |
6 | JBrowse | toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1 |
7 | Create or Update Organism | toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5 |
8 | Annotate | toolshed.g2.bx.psu.edu/repos/gga/apollo_iframe/iframe/4.2.5 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
1.0 (latest) Created 16th Jul 2024 at 14:05 by Helena Rasche
Added/updated 4 files
Open
master
c92f85a
3.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche
Added/updated 4 files
Frozen
3.0
2bcf1d6
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
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Discussion Channel
Activity
Views: 198 Downloads: 84
Created: 25th Jun 2024 at 11:08
Last updated: 25th Jun 2024 at 11:08
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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