Workflow Type: Galaxy
Open
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Genome annotation with Maker (short)
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau
Inputs
ID | Name | Description | Type |
---|---|---|---|
Augustus model | #main/Augustus model | n/a |
|
or cDNA | #main/EST and/or cDNA | n/a |
|
Genome sequence | #main/Genome sequence | n/a |
|
Proteins | #main/Proteins | n/a |
|
SNAP model | #main/SNAP model | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Fasta Statistics | toolshed.g2.bx.psu.edu/repos/simon-gladman/fasta_stats/fasta-stats/1.0.0 |
6 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 |
7 | Maker | toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 |
8 | Map annotation ids | toolshed.g2.bx.psu.edu/repos/iuc/maker_map_ids/maker_map_ids/2.31.10 |
9 | Genome annotation statistics | toolshed.g2.bx.psu.edu/repos/iuc/jcvi_gff_stats/jcvi_gff_stats/0.8.4 |
10 | gffread | toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.1 |
11 | JBrowse | toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.4+galaxy3 |
12 | Busco | toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Busco summary final round | #main/Busco summary final round | n/a |
|
_anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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_anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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_anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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_anonymous_output_13 | #main/_anonymous_output_13 | n/a |
|
_anonymous_output_14 | #main/_anonymous_output_14 | n/a |
|
_anonymous_output_15 | #main/_anonymous_output_15 | n/a |
|
_anonymous_output_16 | #main/_anonymous_output_16 | n/a |
|
_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
1.0 (latest) Created 16th Jul 2024 at 14:04 by Helena Rasche
Added/updated 4 files
Open
master
4ed55b5
2.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche
Added/updated 4 files
Frozen
2.0
6b536e0
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Views: 203 Downloads: 83
Created: 25th Jun 2024 at 11:08
Last updated: 25th Jun 2024 at 11:08
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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