Genome annotation with Maker (short)

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Workflow Type: Galaxy

Genome annotation with Maker (short)

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1194?version=2

Inputs

ID Name Description Type
Augustus model #main/Augustus model n/a
  • File
or cDNA #main/EST and/or cDNA n/a
  • File
Genome sequence #main/Genome sequence n/a
  • File
Proteins #main/Proteins n/a
  • File
SNAP model #main/SNAP model n/a
  • File

Steps

ID Name Description
5 Fasta Statistics toolshed.g2.bx.psu.edu/repos/simon-gladman/fasta_stats/fasta-stats/1.0.0
6 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1
7 Maker toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10
8 Map annotation ids toolshed.g2.bx.psu.edu/repos/iuc/maker_map_ids/maker_map_ids/2.31.10
9 Genome annotation statistics toolshed.g2.bx.psu.edu/repos/iuc/jcvi_gff_stats/jcvi_gff_stats/0.8.4
10 gffread toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.1
11 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.4+galaxy3
12 Busco toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1

Outputs

ID Name Description Type
Busco summary final round #main/Busco summary final round n/a
  • File
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:04 by Helena Rasche

Added/updated 4 files


Open master 4ed55b5

2.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche

Added/updated 4 files


Frozen 2.0 6b536e0
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
BUSCO
MAKER
gffread
JBrowse
License
Creative Commons Attribution 4.0 International
Activity

Views: 203   Downloads: 83

Created: 25th Jun 2024 at 11:08

Last updated: 25th Jun 2024 at 11:08

help Attributions

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Total size: 104 KB
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