Workflow Type: Galaxy
Open
Annotating a protein list identified by LC-MS/MS experiments
Associated Tutorial
This workflows is part of the tutorial ProteoRE ProteomeAnnotation Tutorial (release 2.0), available in the GTN
Thanks to...
Tutorial Author(s): Valentin Loux, Florence Combes, David Christiany, Yves Vandenbrouck
Inputs
ID | Name | Description | Type |
---|---|---|---|
Bredberg.txt | Bredberg.txt | n/a |
|
Lacombe_et_al_2017.txt | Lacombe_et_al_2017.txt | n/a |
|
Mucilli.txt | Mucilli.txt | n/a |
|
Steps
ID | Name | Description |
---|---|---|
10 | View proteins on Reactome maps | toolshed.g2.bx.psu.edu/repos/proteore/proteore_reactome/reactome_analysis/2018.12.12 |
11 | GO terms classification and enrichment analysis | toolshed.g2.bx.psu.edu/repos/proteore/proteore_clusterprofiler/cluter_profiler/2019.02.18 |
3 | Build a lung proteome (as a background ) | toolshed.g2.bx.psu.edu/repos/proteore/proteore_tissue_specific_expression_data/retrieve_from_hpa/2019.02.27 |
4 | Filter technical contaminants | toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11 |
5 | ID Converter | toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07 |
6 | ID mapping UniProt <-> ENSG ID | toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07 |
7 | MS/MS datasets comparison | toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/Jvenn/2019.02.21 |
8 | Add expression data | toolshed.g2.bx.psu.edu/repos/proteore/proteore_expression_rnaseq_abbased/rna_abbased_data/2019.03.07 |
9 | Filter biological contaminants | toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11 |
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:10 by Helena Rasche
Added/updated 4 files
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Views: 142 Downloads: 49
Created: 25th Jun 2024 at 11:10
Last updated: 25th Jun 2024 at 11:10
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