Workflow Type: Galaxy
Open
Frozen
Associated Tutorial
This workflows is part of the tutorial Preprocessing of 10X scRNA-seq data, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Mehmet Tekman, Hans-Rudolf Hotz, Daniel Blankenberg, Wendi Bacon, Pavankumar Videm
Workflow Author(s): Wendi Bacon, Pavankumar Videm, Mehmet Tekman, Hans-Rudolf Hotz, Daniel Blankenberg
Inputs
ID | Name | Description | Type |
---|---|---|---|
3M-february-2018.txt.gz | 3M-february-2018.txt.gz | n/a |
|
Homo_sapiens.GRCh37.75.gtf | Homo_sapiens.GRCh37.75.gtf | n/a |
|
subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz | subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz | n/a |
|
subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz | subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz | n/a |
|
subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz | subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz | n/a |
|
subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz | subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz | n/a |
|
Steps
ID | Name | Description |
---|---|---|
6 | RNA STARSolo | toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.10b+galaxy3 |
7 | DropletUtils | toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2 |
8 | DropletUtils | toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2 |
9 | DropletUtils | toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2 |
Version History
1.0 (latest) Created 16th Jul 2024 at 14:11 by Helena Rasche
Added/updated 4 files
Open
master
ebfcaa7
3.0 (earliest) Created 25th Jun 2024 at 11:12 by Helena Rasche
Added/updated 4 files
Frozen
3.0
9700704
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Views: 178 Downloads: 68
Created: 25th Jun 2024 at 11:12
Last updated: 25th Jun 2024 at 11:12
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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