Workflow Type: Galaxy
Open
Frozen
DIA library Training HEK Ecoli data
Associated Tutorial
This workflows is part of the tutorial DIA_lib_OSW, available in the GTN
Thanks to...
Tutorial Author(s): Matthias Fahrner, Melanie Föll
Inputs
ID | Name | Description | Type |
---|---|---|---|
DDA_data collection | #main/DDA_data collection | n/a |
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FASTA collection | #main/FASTA collection | n/a |
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HEK_Ecoli_exp_design.txt | #main/HEK_Ecoli_exp_design.txt | n/a |
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iRTassays.tsv | #main/iRTassays.tsv | n/a |
|
Steps
ID | Name | Description |
---|---|---|
4 | MaxQuant | toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3 |
5 | Filter | Filter1 |
6 | Filter | Filter1 |
7 | diapysef library generation | toolshed.g2.bx.psu.edu/repos/galaxyp/diapysef/diapysef/0.3.5.0 |
8 | OpenSwathAssayGenerator | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0 |
9 | OpenSwathDecoyGenerator | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.5+galaxy0 |
10 | TargetedFileConverter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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_anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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_anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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_anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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_anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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_anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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_anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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_anonymous_output_17 | #main/_anonymous_output_17 | n/a |
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_anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
1.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche
Added/updated 4 files
Open
master
2dc1bda
2.0 (earliest) Created 25th Jun 2024 at 11:12 by Helena Rasche
Added/updated 4 files
Frozen
2.0
fcf75a5
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
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Discussion Channel
Activity
Views: 184 Downloads: 82
Created: 25th Jun 2024 at 11:12
Last updated: 25th Jun 2024 at 11:12
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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