DIA_lib_OSW

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Workflow Type: Galaxy

DIA library Training HEK Ecoli data

Associated Tutorial

This workflows is part of the tutorial DIA_lib_OSW, available in the GTN

Thanks to...

Tutorial Author(s): Matthias Fahrner, Melanie Föll

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1224?version=2

Inputs

ID Name Description Type
DDA_data collection #main/DDA_data collection n/a
  • array containing
    • File
FASTA collection #main/FASTA collection n/a
  • array containing
    • File
HEK_Ecoli_exp_design.txt #main/HEK_Ecoli_exp_design.txt n/a
  • File
iRTassays.tsv #main/iRTassays.tsv n/a
  • File

Steps

ID Name Description
4 MaxQuant toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3
5 Filter Filter1
6 Filter Filter1
7 diapysef library generation toolshed.g2.bx.psu.edu/repos/galaxyp/diapysef/diapysef/0.3.5.0
8 OpenSwathAssayGenerator toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0
9 OpenSwathDecoyGenerator toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.5+galaxy0
10 TargetedFileConverter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master 2dc1bda

2.0 (earliest) Created 25th Jun 2024 at 11:12 by Helena Rasche

Added/updated 4 files


Frozen 2.0 fcf75a5
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
MaxQuant
diaPASEF
License
Creative Commons Attribution 4.0 International
Activity

Views: 547   Downloads: 181

Created: 25th Jun 2024 at 11:12

Last updated: 25th Jun 2024 at 11:12

help Attributions

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Total size: 80 KB
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