GTN - Sequence Analyses - Mapping (imported from uploaded file) 4.0
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Download RO-Crate
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Associated Tutorial
This workflows is part of the tutorial GTN - Sequence Analyses - Mapping (imported from uploaded file), available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Bérénice Batut, Helena Rasche
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| reads_1 | #main/reads_1 | n/a |
|
| reads_2 | #main/reads_2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 4 | Trim Galore! | toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1 |
| 5 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9 |
| 6 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0 |
| 7 | Stats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 |
| 8 | Filter | toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1 |
| 9 | Stats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| bam_stats_1 | #main/bam_stats_1 | n/a |
|
| bam_stats_2 | #main/bam_stats_2 | n/a |
|
| bowtie2_mapping_stats | #main/bowtie2_mapping_stats | n/a |
|
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:17 by Helena Rasche
Added/updated 4 files
Open
mastera20ab2e
Creators and Submitter
Views: 1035 Downloads: 319 Runs: 0
Created: 25th Jun 2024 at 11:17
Last updated: 25th Jun 2024 at 11:17
Tags AttributionsNone
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