Workflow Type: Galaxy
Open
Stable
No description specified
Steps
ID | Name | Description |
---|---|---|
0 | cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.6 |
1 | BWA-MEM -> BAM | toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 |
2 | picard-MarkDuplicates | picard-MarkDuplicates |
3 | gatk-RealignerTargetCreator | gatk-RealignerTargetCreator |
4 | gatk-IndelRealigner | gatk-IndelRealigner |
5 | gatk-BaseRecalibrator | gatk-BaseRecalibrator |
6 | gatk-PrintReads | gatk-PrintReads |
7 | gatk-HaplotypeCaller | gatk-HaplotypeCaller |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_1 | _anonymous_output_1 | n/a |
|
Version History
Version 1 (earliest) Created 23rd Jul 2020 at 11:21 by Laura Rodriguez-Navas
Added/updated 1 files
Open
master
e438ba9
Creators and Submitter
Creators
Not specifiedAdditional credit
Giacomo Tartari
Submitter
License
Activity
Views: 2001 Downloads: 345
Created: 23rd Jul 2020 at 11:21
Last updated: 23rd Jul 2020 at 11:22
Tags
Attributions
None
Collections