Research Engineer in Barcelona Supercomputing Center (BSC)
SEEK ID: https://dev.workflowhub.eu/people/11
Location: Spain
ORCID: https://orcid.org/0000-0003-4929-1219
Joined: 2nd Mar 2020
Expertise: Bioinformatics, Software Engineering
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Web page: Not specified
A project for miscellaneous testing of Workflow Hub.
Space: General
Public web page: Not specified
Organisms: Not specified
Space: General
Public web page: https://ipc-project.eu/
Start date: 1st Jan 2019
End date: 31st May 2023
Organisms: Not specified
MultiAffinity enables the study of how gene dysregulation propagates on a multilayer network on a disease of interest, uncovering key genes. Find the detailed documentation for the tool here.
Type: Common Workflow Language
Creators: Laura Rodriguez-Navas, Mar Batlle
Submitter: Laura Rodriguez-Navas
RO-Crate containing execution provenance about the MaxQuant-Workflow that analyze label-free data with MaxQuant based on Nextflow, running with SDRF implemented. Normalization and statistical comparisons using NormalyzerDE are conducted on the MaxQuant result
Exome SAMtools Workflow
Exome Alignment Workflow
Rare disease researchers workflow is that they submit their raw data (fastq), run the mapping and variant calling RD-Connect pipeline and obtain unannotated gvcf files to further submit to the RD-Connect GPAP or analyse on their own.
This demonstrator focuses on the variant calling pipeline. The raw genomic data is processed using the RD-Connect pipeline (Laurie et al., 2016) running on the standards (GA4GH) compliant, interoperable container ...
Type: Nextflow
Creators: José Mª Fernández, Víctor Fernández
Submitters: Laura Rodriguez-Navas, José Mª Fernández