exome-alignment
Version 1

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Inputs

ID Name Description Type
fastq_files n/a List of paired-end input FASTQ files File[]
reference_genome n/a Compress FASTA files with the reference genome chromosomes File
readgroup_str n/a Parsing header which should correlate to FASTQ files string
sample_name n/a Sample name string

Steps

ID Name Description
gunzip
picard_dictionary
cutadapt
bwa_index
samtools_index
bwa_mem
samtools_sort
picard_markduplicates

Outputs

ID Name Description Type
md_bam n/a n/a File
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Activity

Views: 104   Downloads: 2

Created: 3rd Mar 2021 at 15:16

Last updated: 3rd Mar 2021 at 15:17

Last used: 15th May 2021 at 01:27

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Version History

Version 1 Created 3rd Mar 2021 at 15:16 by Laura Rodriguez-Navas

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