Workflow Type: Galaxy
Open
Frozen
Associated Tutorial
This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
Tutorial Author(s): Thomas Wollmann, Leonid Kostrykin
Funder(s): ELIXIR Europe
Steps
ID | Name | Description |
---|---|---|
2 | Filter 2-D image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/1.12.0+galaxy1 |
3 | Threshold image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.18.1+galaxy3 |
4 | Convert binary image to label map | toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.5+galaxy0 |
5 | Extract image features | toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0 |
6 | Filter label map by rules | toolshed.g2.bx.psu.edu/repos/imgteam/2d_filter_segmentation_by_features/ip_2d_filter_segmentation_by_features/0.0.1-4 |
7 | Extract image features | toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0 |
Version History
6.0 (latest) Created 11th Nov 2024 at 13:23 by Helena Rasche
Added/updated 4 files
Open
master
1724778
7.0 (earliest) Created 25th Jun 2024 at 11:17 by Helena Rasche
Added/updated 4 files
Frozen
7.0
38fda74
Creators and Submitter
Creators
Not specifiedSubmitter
Discussion Channel
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Activity
Views: 593 Downloads: 172
Created: 25th Jun 2024 at 11:17
Last updated: 11th Nov 2024 at 13:23
Attributions
None