scATAC-seq Count Matrix Filtering
1.0

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial scATAC-seq Count Matrix Filtering, available in the GTN

Features

Thanks to...

Tutorial Author(s): Pavankumar Videm

Workflow Author(s): Pavankumar Videm

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1275?version=1

Inputs

ID Name Description Type
scATAC-seq Anndata scATAC-seq Anndata n/a
  • File

Steps

ID Name Description
1 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
2 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
3 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
4 Plot toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1
5 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
6 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
7 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
8 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
9 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
10 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
11 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
12 Plot toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:18 by Helena Rasche

Added/updated 4 files


Open master 033519a
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GTN Matrix
Tools
epiScanpy
SCANPY
License
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Activity

Views: 929   Downloads: 264   Runs: 0

Created: 25th Jun 2024 at 11:18

Last updated: 25th Jun 2024 at 11:18

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