scATAC-seq Count Matrix Filtering
1.0

Visit source Download RO-Crate
Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial scATAC-seq Count Matrix Filtering, available in the GTN

Features

Thanks to...

Tutorial Author(s): Pavankumar Videm

Workflow Author(s): Pavankumar Videm

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1275?version=1

Inputs

ID Name Description Type
scATAC-seq Anndata scATAC-seq Anndata n/a
  • File

Steps

ID Name Description
1 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
2 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
3 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
4 Plot toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1
5 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
6 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
7 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
8 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
9 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
10 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
11 scATAC-seq Preprocessing toolshed.g2.bx.psu.edu/repos/iuc/episcanpy_preprocess/episcanpy_preprocess/0.3.2+galaxy1
12 Plot toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:18 by Helena Rasche

Added/updated 4 files


Open master 033519a
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
epiScanpy
SCANPY
License
Creative Commons Attribution 4.0 International
Activity

Views: 293   Downloads: 80

Created: 25th Jun 2024 at 11:18

Last updated: 25th Jun 2024 at 11:18

help Tags
help Attributions

None

Total size: 91.1 KB
Powered by
 (v.1.16.0-main)
About Dev WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH