sRNA Seq Step 2: Salmon And DESeq2

This workflow completes the second part of the sRNA-seq tutorial from transcript quantification through differential abundance testing.

Associated Tutorial

This workflows is part of the tutorial sRNA Seq Step 2: Salmon And DESeq2, available in the GTN

Tutorial Author(s): Mallory Freeberg

Steps

ID	Name	Description
4	Salmon	Salmon quantification on control datasets calculating SF/sense hits toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.8.2
5	Salmon	Salmon quantification on control datasets calculating SR/antisense hits toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.8.2
6	Salmon	Salmon quantification on case datasets calculating SF/sense hits toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.8.2
7	Salmon	Salmon quantification on case datasets calculating SR/antisense hits toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/0.8.2
8	DESeq2	Calculating differential abundance of SF/sense hits toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.39
9	DESeq2	Calculating differential abundance of SR/antisense hits toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.39
10	Filter	Filter1
11	Filter	Filter1