QC report

Visit source Download RO-Crate
Workflow Type: Galaxy

rna-seq-reads-to-counts

Associated Tutorial

This workflows is part of the tutorial QC report, available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Belinda Phipson, Harriet Dashnow

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1299?version=2

Inputs

ID Name Description Type
BAM files #main/BAM files n/a
  • array containing
    • File
Reference genes #main/Reference genes n/a
  • File

Steps

ID Name Description
2 Infer Experiment toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1
3 MarkDuplicates toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1
4 Samtools idxstats toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2
5 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7

Outputs

ID Name Description Type
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File

Version History

2.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche

Added/updated 4 files


Open master b631b67

4.0 (earliest) Created 25th Jun 2024 at 11:21 by Helena Rasche

Added/updated 4 files


Frozen 4.0 8cf4831
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
RSeQC
SAMtools
MultiQC
License
Creative Commons Attribution 4.0 International
Activity

Views: 176   Downloads: 68

Created: 25th Jun 2024 at 11:21

Last updated: 25th Jun 2024 at 11:21

help Attributions

None

Total size: 44.3 KB
Powered by
 (v.1.16.0-main)
About Dev WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH