Workflow Type: Galaxy
Open
Frozen
rna-seq-reads-to-counts
Associated Tutorial
This workflows is part of the tutorial QC report, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Belinda Phipson, Harriet Dashnow
Inputs
ID | Name | Description | Type |
---|---|---|---|
BAM files | #main/BAM files | n/a |
|
Reference genes | #main/Reference genes | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | Infer Experiment | toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 |
3 | MarkDuplicates | toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1 |
4 | Samtools idxstats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2 |
5 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
_anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
Version History
2.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche
Added/updated 4 files
Open
master
b631b67
4.0 (earliest) Created 25th Jun 2024 at 11:21 by Helena Rasche
Added/updated 4 files
Frozen
4.0
8cf4831
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creators
Not specifiedSubmitter
Discussion Channel
Activity
Views: 176 Downloads: 68
Created: 25th Jun 2024 at 11:21
Last updated: 25th Jun 2024 at 11:21
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
None