Protein MD Setup using BioExcel Building Blocks (biobb) (jupyter notebook)
Version 1


This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

Workflow engine is a jupyter notebook. It can be run in binder, following the link given, or locally. Auxiliar libraries used are: nb_conda_kernels, nglview, ipywidgets, plotly, and simpletraj. Environment can be setup using the included environment.yml file.

help Creators and Submitter

Views: 313   Downloads: 15

Created: 11th Sep 2020 at 09:43

Last used: 14th May 2021 at 09:56

help Tags

This item has not yet been tagged.

help Attributions


Version History

Version 1 Created 11th Sep 2020 at 09:43 by Douglas Lowe

No revision comments

Related items

Powered by
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH