MakeAFakeInput 4.0
Visit source
Download RO-CrateCreating a new tutorial
Associated Tutorial
This workflows is part of the tutorial MakeAFakeInput, available in the GTN
Thanks to...
Tutorial Author(s): Bérénice Batut, Helena Rasche, Saskia Hiltemann, Lucille Delisle
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| SRR891268_R1_20M.fastq.gz | SRR891268_R1_20M.fastq.gz | n/a |
|
| SRR891268_R2_20M.fastq.gz | SRR891268_R2_20M.fastq.gz | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 10 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 11 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 12 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 |
| 13 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 14 | seqtk_subseq | toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 |
| 15 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 16 | seqtk_subseq | toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 |
| 2 | FASTQ to Tabular | toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.1 |
| 3 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5 |
| 4 | Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
| 5 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3 |
| 6 | Select random lines | random_lines1 |
| 7 | BAM-to-SAM | toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 |
| 8 | Filter | Filter1 |
| 9 | Cut | Cut1 |
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:22 by Helena Rasche
Added/updated 4 files
Open
master8789360
Creators and Submitter
Views: 388 Downloads: 98
Created: 25th Jun 2024 at 11:22
Last updated: 25th Jun 2024 at 11:22
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test
Web page: Not specified
Space: General
Public web page: https://galaxy.training
