MakeAFakeInput 4.0
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Associated Tutorial
This workflows is part of the tutorial MakeAFakeInput, available in the GTN
Thanks to...
Tutorial Author(s): Bérénice Batut, Helena Rasche, Saskia Hiltemann, Lucille Delisle
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| SRR891268_R1_20M.fastq.gz | SRR891268_R1_20M.fastq.gz | n/a |
|
| SRR891268_R2_20M.fastq.gz | SRR891268_R2_20M.fastq.gz | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 10 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 11 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 12 | Concatenate datasets | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0 |
| 13 | Unique | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 |
| 14 | seqtk_subseq | toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 |
| 15 | Text transformation | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 |
| 16 | seqtk_subseq | toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 |
| 2 | FASTQ to Tabular | toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.1 |
| 3 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5 |
| 4 | Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
| 5 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3 |
| 6 | Select random lines | random_lines1 |
| 7 | BAM-to-SAM | toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 |
| 8 | Filter | Filter1 |
| 9 | Cut | Cut1 |
Version History
4.0 (earliest) Created 25th Jun 2024 at 11:22 by Helena Rasche
Added/updated 4 files
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master8789360
Creators and Submitter
Views: 146 Downloads: 50
Created: 25th Jun 2024 at 11:22
Last updated: 25th Jun 2024 at 11:22
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