Workflow Type: Galaxy
Open
RNA-seq genes to pathways
Associated Tutorial
This workflows is part of the tutorial RNA Seq Genes To Pathways (imported from uploaded file), available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Belinda Phipson
Inputs
ID | Name | Description | Type |
---|---|---|---|
DE table | #main/DE table | n/a |
|
factordata | #main/factordata | n/a |
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limma_filtered_counts | #main/limma_filtered_counts | n/a |
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mouse_hallmark_sets | #main/mouse_hallmark_sets | n/a |
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seqdata | #main/seqdata | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 |
6 | Cut | Cut1 |
7 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
8 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 |
9 | Join two Datasets | join1 |
10 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
11 | EGSEA | toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.20.0 |
12 | Cut | Cut1 |
13 | Cut | Cut1 |
14 | fgsea | toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.8.0+galaxy1 |
15 | goseq | toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.44.0+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_1 | #main/_anonymous_output_1 | n/a |
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_anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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_anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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_anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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_anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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_anonymous_output_14 | #main/_anonymous_output_14 | n/a |
|
_anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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_anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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_anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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_anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
5.0 (earliest) Created 25th Jun 2024 at 11:23 by Helena Rasche
Added/updated 4 files
Open
master
8b1a987
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Activity
Views: 145 Downloads: 42
Created: 25th Jun 2024 at 11:23
Last updated: 25th Jun 2024 at 11:23
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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