metaQuantome_datacreation_workflow 13.0
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Download RO-Cratemetaquantome-data-creation
Associated Tutorial
This workflows is part of the tutorial metaQuantome 1: Data creation, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Subina Mehta, Timothy J. Griffin, Pratik Jagtap, Emma Leith, Marie Crane
Steps
| ID | Name | Description |
|---|---|---|
| 3 | mzml to mgf | toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.0 |
| 4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
| 5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3 |
| 6 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| 7 | Remove beginning | Remove beginning1 |
| 8 | Unipept_lca | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0 |
| 9 | FlashLFQ | toolshed.g2.bx.psu.edu/repos/galaxyp/flashlfq/flashlfq/1.0.3.0 |
| 10 | Unipept_peptinfo | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.0 |
| 11 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
| 12 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 13 | selecting EC column | Cut1 |
| 14 | filter 5% (All_funct) | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 15 | GO_EC | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 16 | GO_BP | Filter1 |
| 17 | GO_CC | Filter1 |
| 18 | GO_MF | Filter1 |
Version History
13.0 (earliest) Created 26th Jun 2024 at 14:54 by Helena Rasche
Added/updated 4 files
Open
master73490d2
Creators and Submitter
Views: 141 Downloads: 49
Created: 26th Jun 2024 at 14:54
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
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