Music Stage 4 - Compute metrics
1.0

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Evaluating Reference Data for Bulk RNA Deconvolution, available in the GTN

Workflow Author(s): Morgan Howells

Tutorial Author(s): Morgan Howells

Tutorial Contributor(s): Carlos Chee Mendonça, Saskia Hiltemann, Morgan Howells

Grants(s): ELIXIR-UK: FAIR Data Stewardship training

SEEK ID: https://dev.workflowhub.eu/workflows/1392?version=1

ID	Name	Description	Type
Cell Proportions	#main/Cell Proportions	Tabular dataset with row and column headers Rows = cell types Columns = ACTUAL followed by INFERRED Numbers = cell proportions	File

ID	Name	Description
1	Compute mean	toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0
2	Compute squared error	This computes (actual-expected)^2 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0
3	Remove duplicate	Remove beginning1
4	Cut RMSE column	Takes the (actual-inferred)^2 column alone Cut1
5	Paste	Paste1
6	Average error values	toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0
7	Add mean column	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1
8	Square root error	Finally we take the square root of the number to get the RSME toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0
9	Compute differences	toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1
10	Cut	Cut1
11	Sum rows	toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0
12	Transpose	toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.8+galaxy1
13	Final Pearson correlation	toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1
14	Cut Pearson column	Cut1

ID	Name	Description	Type
Pearson Correlation	#main/Pearson Correlation	n/a	File
Squared Error	#main/Squared Error	n/a	File

Added/updated 4 files

Open master a212e9e

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Views: 24 Downloads: 6

Created: 3rd Feb 2025 at 13:07