Understanding Barcodes
1.0

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Understanding Barcodes, available in the GTN

Features

Thanks to...

Workflow Author(s): Morgan

Tutorial Author(s): Mehmet Tekman

Tutorial Contributor(s): Morgan Howells, Mehmet Tekman, Lucille Delisle, Helena Rasche, Saskia Hiltemann, Nicola Soranzo, Bérénice Batut, Björn Grüning, Wendi Bacon, Mohua Das

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1397?version=1

Inputs

ID Name Description Type
FastQ data #main/FastQ data n/a
  • array containing
    • File
Reads filter list #main/Reads filter list n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1
3 Filter sequences by ID toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.9
4 UMI-tools extract toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/1.1.6+galaxy0

Outputs

ID Name Description Type
html_file #main/html_file n/a
  • File
out_paired_collection #main/out_paired_collection n/a
  • File
output_pos #main/output_pos n/a
  • File
text_file #main/text_file n/a
  • File

Version History

1.0 (earliest) Created 17th Feb 2025 at 13:07 by Helena Rasche

Added/updated 4 files


Open master 74429ea
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FastQC
Biopython
UMI-tools
License
No license - no permission to use unless the owner grants a licence
Activity

Views: 44   Downloads: 12

Created: 17th Feb 2025 at 13:07

help Attributions

None

Total size: 53.5 KB
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