COVID-19: read pre-processing from SRA data
Version 1

Abstract CWL generated from Galaxy workflow file: COVID-19: read pre-processing from SRA data

Inputs

ID Name Description Type
Illumina dataset collection n/a n/a File
ONT dataset collection n/a n/a File

Steps

ID Name Description
10_Filter SAM or BAM, output SAM or BAM
11_MergeSamFiles
12_MergeSamFiles
13_Samtools fastx
14_Samtools fastx
2_fastp
3_NanoPlot
4_FastQC
5_Map with minimap2
6_MultiQC
7_Map with BWA-MEM
8_MultiQC
9_Filter SAM or BAM, output SAM or BAM
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Views: 294   Downloads: 8

Created: 27th Mar 2020 at 14:18

Last used: 17th Jan 2021 at 20:32

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Version 1 Created 27th Mar 2020 at 14:18 by Ignacio Eguinoa

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