Abstract CWL generated from Galaxy workflow file: COVID-19: read pre-processing from SRA data
Inputs
ID | Name | Description | Type |
---|---|---|---|
Illumina dataset collection | n/a | n/a | File |
ONT dataset collection | n/a | n/a | File |
Steps
ID | Name | Description |
---|---|---|
10_Filter SAM or BAM, output SAM or BAM | ||
11_MergeSamFiles | ||
12_MergeSamFiles | ||
13_Samtools fastx | ||
14_Samtools fastx | ||
2_fastp | ||
3_NanoPlot | ||
4_FastQC | ||
5_Map with minimap2 | ||
6_MultiQC | ||
7_Map with BWA-MEM | ||
8_MultiQC | ||
9_Filter SAM or BAM, output SAM or BAM |

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Views: 294 Downloads: 8
Created: 27th Mar 2020 at 14:18
Last used: 17th Jan 2021 at 20:32

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Version 1 Created 27th Mar 2020 at 14:18 by Ignacio Eguinoa
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