COVID-19: read pre-processing from SRA data Version 1
Download RO CrateAbstract CWL generated from Galaxy workflow file: COVID-19: read pre-processing from SRA data
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Illumina dataset collection | n/a | n/a | File |
| ONT dataset collection | n/a | n/a | File |
Steps
| ID | Name | Description |
|---|---|---|
| 10_Filter SAM or BAM, output SAM or BAM | ||
| 11_MergeSamFiles | ||
| 12_MergeSamFiles | ||
| 13_Samtools fastx | ||
| 14_Samtools fastx | ||
| 2_fastp | ||
| 3_NanoPlot | ||
| 4_FastQC | ||
| 5_Map with minimap2 | ||
| 6_MultiQC | ||
| 7_Map with BWA-MEM | ||
| 8_MultiQC | ||
| 9_Filter SAM or BAM, output SAM or BAM |
Creators and SubmitterLicense
Activity
Views: 294 Downloads: 8
Created: 27th Mar 2020 at 14:18
Last used: 17th Jan 2021 at 20:32
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Version History
Version 1 Created 27th Mar 2020 at 14:18 by Ignacio Eguinoa
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Related items
https://orcid.org/0000-0002-6190-122X
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