COVID-19: read pre-processing from SRA data
Version 1

Workflow Type: Common Workflow Language

Abstract CWL generated from Galaxy workflow file: COVID-19: read pre-processing from SRA data

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SEEK ID: https://dev.workflowhub.eu/workflows/45?version=1

Inputs

ID	Name	Description	Type
Illumina dataset collection	n/a	n/a	File
ONT dataset collection	n/a	n/a	File

ID	Name	Description
10_Filter SAM or BAM, output SAM or BAM	n/a	n/a
11_MergeSamFiles	n/a	n/a
12_MergeSamFiles	n/a	n/a
13_Samtools fastx	n/a	n/a
14_Samtools fastx	n/a	n/a
2_fastp	n/a	n/a
3_NanoPlot	n/a	n/a
4_FastQC	n/a	n/a
5_Map with minimap2	n/a	n/a
6_MultiQC	n/a	n/a
7_Map with BWA-MEM	n/a	n/a
8_MultiQC	n/a	n/a
9_Filter SAM or BAM, output SAM or BAM	n/a	n/a