Genetic Design (BASIC Assembly)
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/810?version=1

Inputs

ID Name Description Type
DNA-Bot settings #main/DNA-Bot settings n/a
  • File
Enzyme taxon IDs #main/Enzyme taxon IDs Comma separated values
  • string
Host taxon ID #main/Host taxon ID n/a
  • int
Linkers and user parts #main/Linkers and user parts n/a
  • File
Pathway (SBML) #main/Pathway (SBML) n/a
  • File

Steps

ID Name Description
5 Selenzyme Performs enzyme selection from a reaction query. toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0
6 BasicDesign Extracts enzyme IDs from rpSBML files. toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4
7 DNA-Bot DNA assembly using BASIC on OpenTrons. toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0

Outputs

ID Name Description Type
Uniprot IDs #main/Uniprot IDs n/a
  • File
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File

Version History

3 (earliest) Created 22nd Apr 2024 at 10:31 by Helena Rasche

Added/updated 3 files


Open master 97aa5f9
help Creators and Submitter
Creators
Not specified
Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 49

Created: 22nd Apr 2024 at 10:31

Last updated: 22nd Apr 2024 at 10:31

help Attributions

None

Total size: 18.4 KB
Powered by
 (v.1.15.0-pre)
About Dev WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH