Proteomics: MaxQuant workflow
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/823?version=1

Inputs

ID Name Description Type
Protein_database #main/Protein_database n/a
  • File
Sample1 #main/Sample1 n/a
  • File
Sample2 #main/Sample2 n/a
  • File

Steps

ID Name Description
3 MaxQuant toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3
4 Filter Filter1
5 Select Grep1
6 Cut Cut1
7 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
8 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
9 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
10 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
11 Cut Cut1
12 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
13 Histogram toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

8 (earliest) Created 22nd Apr 2024 at 10:33 by Helena Rasche

Added/updated 3 files


Open master 720100d
help Creators and Submitter
Creators
Not specified
Submitter
Tool
MaxQuant
License
Creative Commons Attribution 4.0 International
Activity

Views: 25

Created: 22nd Apr 2024 at 10:33

Last updated: 22nd Apr 2024 at 10:33

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Total size: 30.8 KB
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