RNA-RNA interactome data analysis - chira v1.4.3
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/833?version=1

Inputs

ID Name Description Type
annotation_gtf #main/annotation_gtf n/a
  • File
genome_fasta #main/genome_fasta n/a
  • File
reads_fastq #main/reads_fastq n/a
  • File
reference1_fasta #main/reference1_fasta n/a
  • File
reference2_fasta #main/reference2_fasta n/a
  • File

Steps

ID Name Description
5 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
6 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5
7 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
8 ChiRA collapse toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy0
9 ChiRA map toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.3+galaxy0
10 ChiRA merge toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.3+galaxy0
11 ChiRA qauntify toolshed.g2.bx.psu.edu/repos/iuc/chira_quantify/chira_quantify/1.4.3+galaxy0
12 ChiRA extract toolshed.g2.bx.psu.edu/repos/iuc/chira_extract/chira_extract/1.4.3+galaxy0
13 Query Tabular toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File
chimeric_reads #main/chimeric_reads n/a
  • File
db #main/db n/a
  • File
interactions #main/interactions n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 10:35 by Helena Rasche

Added/updated 3 files


Open master d460e70
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FastQC
Cutadapt
ChiRA
License
Creative Commons Attribution 4.0 International
Activity

Views: 45

Created: 22nd Apr 2024 at 10:35

Last updated: 22nd Apr 2024 at 10:35

help Attributions

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Total size: 34.4 KB
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